Login
Search this site:
Home
Simon Berger
My work focuses on phylogenetic placement (and simultaneous tree-aware alignment) of short reads.
Printer-friendly version
People
Project PIs
A. Elizabeth (Betsy) Arnold
Ignazio Carbone
François Lutzoni
Georgiana May
Senior Researchers
Jolanta Miadlikowska
Postdoctoral Associates
Emilie Lefevre
Jana M. U’Ren
Ryoko Oono
Naupaka Zimmerman
Val Wong
Graduate Students
Trent Monacell
Justin Shaffer
Ko-Hsuan Chen
Kayla Arendt
Bioinformatics
Simon Berger
Alexandros Stamatakis
Frank Kauff
Kisurb Choe
IT Support
Rakhi Singh
Affiliated Researchers
Pedro Crous
Mikhail Zhurbenko
David Baltrus
Priscila Chaverri
Visiting Participants (Taxonomy)
Julien Ponchart
Romina Orietta Gazis
Outreach
Teachers and Outreach Coordinators
Margaret Wilch
Susan Furr
Linda Schmalbeck
Myra Halpin
Undergraduate and High School Students
Stephen Tourigny
Alumni
Frankie Orozco
Ochana Otto
Brittany Peña
Jakob Riddle
Dustin Sandberg
Amber Ross
Lisa LaManna
Anita Simha
Ashley Gartin
Laurel Koch
Sharon Jiang
Nicholas Massimo
Primary links
Dimensions of Biodiversity
INTRODUCTION
SCALE OF BIODIVERSITY
TAXONOMIC
FUNCTIONAL
GENETICS
DATA RELEASE
People
Project PIs
A. Elizabeth (Betsy) Arnold
Ignazio Carbone
François Lutzoni
Georgiana May
Senior Researchers
Jolanta Miadlikowska
Postdoctoral Associates
Emilie Lefevre
Jana M. U’Ren
Ryoko Oono
Naupaka Zimmerman
Val Wong
Graduate Students
Trent Monacell
Justin Shaffer
Ko-Hsuan Chen
Kayla Arendt
Bioinformatics
Simon Berger
Alexandros Stamatakis
Frank Kauff
Kisurb Choe
IT Support
Rakhi Singh
Affiliated Researchers
Pedro Crous
Mikhail Zhurbenko
David Baltrus
Priscila Chaverri
Visiting Participants (Taxonomy)
Julien Ponchart
Romina Orietta Gazis
Outreach
Teachers and Outreach Coordinators
Margaret Wilch
Susan Furr
Linda Schmalbeck
Myra Halpin
Undergraduate and High School Students
Stephen Tourigny
Alumni
Frankie Orozco
Ochana Otto
Brittany Peña
Jakob Riddle
Dustin Sandberg
Amber Ross
Lisa LaManna
Anita Simha
Ashley Gartin
Laurel Koch
Sharon Jiang
Nicholas Massimo
News & Events
News
New publication by Ph.D. student Ko-Hsuan Chen
Congratulations Ko-Hsuan Chen – Best poster award at IMC10
Congratulations Ko-Hsuan Chen – Recipient of an MSA Graduate Fellowship
Welcome Paulina Ramos, visiting DOB scholar!
Welcome, Naupaka Zimmerman - new postdoctoral fellow!
Congratulations, Ryoko Oono, for obtaining an Assistant Professor position at the University of California, Santa Barbara
Welcome, Justin Shaffer, new Ph.D. student!
Welcome, Julien Ponchart, visiting participant!
Welcome, Ko-Hsuan Chen, new Ph.D. Student
Welcome, Kayla Arendt, new MS student!
Congratulations to Ochana Otto, Dimensions of Biodiversity High School Fellow
Congratulations to Frankie Orozco, Dimensions of Biodiversity High School Fellow
Welcome, Ryoko Oono, New Postdoctoral Research Associate
Events
Fieldwork in the Huron Mountains - complete!
Endophyte Diversity Workshop with Tucson High - 2013
Fieldwork in Alberta -- complete!
Fieldwork in Russia, part two: the Russian Far East...complete!
Sweden fieldwork...complete! July 2012
Central Russia fieldwork...complete! June 2012
Endophyte Diversity Workshop, Tucson High: January-May 2012
Endophyte Diversity Workshop Part II at NCSSM
Endophyte Diversity Workshop with NCSSM students
EnDoBiodiversity: research and outreach at National Geographic's BioBlitz
Alaska fieldwork complete! August 2011
Eastern Canada fieldwork complete! July 2011
DoB Quarterly Meeting at NESCent, April 2011
STEM 'Science Day' brings students to Dimensions of Biodiversity lab
Resources
Model endophyte JBrowse
Mobyle SNAP Workbench version 1.0.7
Public Mobyle SNAP Workbench
Outreach
Overview
People